It's been a while since the latest update on this front, so here is a quick mention of developments in two programs I've followed over the years.
1) "Getting Started With Tinderbox." For the past few years, my go-to workhorse program for data organizing/software-for-thinking has been the Mac-only program Tinderbox, from Eastgate Systems in Watertown, Massachusetts. (My program for writing, as I can't mention often enough, is the absolutely unparalleled Scrivener, from Literature and Latte software in Cornwall, England.) I still love the idea-organizing program Zoot, which I first wrote about in this magazine back in the mid-1990s. But Zoot is Windows-only, and since I made the switch to the Mac world six years ago, fleeing the nightmare that was Windows Vista, I've mainly had to admire Zoot from afar.
In an age of ubiquitous free apps, Tinderbox can seem pricey. It's $249 for initial purchase and updates for a year, and then $98 a year for ongoing updated releases. The new releases are frequent and valuable (as are those that Zoot's creator, Tom Davis, keeps issuing for his program). But if you don't care about them you can use the original program as long as you want. Tinderbox's creator, Mark Bernstein, has justified his business approach as part of a new wave of "artisanal software" or Neo-Victorian computing. You pay more for craft beer than for the cheapest swill; you may choose to pay more for organic food than the very cheapest source of calories. So too with certain kinds of software.