Here’s the first and most important thing to understand about the crime for which President Trump just pardoned former National Security Adviser Michael Flynn: Flynn did not lie to protect himself. He lied to protect Donald Trump.
At the end of December 2016, Flynn had a series of conversations with Russian Ambassador Sergey Kislyak. A month later, on January 24, 2017, Flynn was asked about those conversations by the FBI agent Peter Strzok.
In the first set of conversations, Flynn urged Kislyak to oppose a United Nations Security Council resolution condemning Israeli settlement activity. The second set occurred a week later, while Flynn was on holiday in the Dominican Republic. There, Flynn sought to convince Kislyak to persuade the Russian government not to retaliate against the United States, over a round of sanctions punishing Russia for intervening in the 2016 election to help Donald Trump.
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From Flynn’s own narrow personal point of view, there was no reason to lie about any of these conversations. Yes, he was pushing the limits a little bit, doing diplomacy before the new administration took office. A more elegant diplomat would have found a way to honor the rule that there’s only one administration at a time, while also communicating what he wanted the Russians to know about the differing intentions of the incoming administration. But such limit-pushing has surely happened often before in the history of American foreign policy. All Flynn had to say to avoid legal jeopardy was, “Yes, I spoke to Ambassador Kislyak. Possibly I was premature. My bad.”