The Story of How U.S. Special Forces Infiltrated Pakistan

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Using special tracking technology and CIA oversight, teams have quietly crossed the border to challenge al-Qaeda, the Taliban, and their supporters in the Pakistani spy service.

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U.S. special forces in Afghanistan / AP

With Osama bin Laden dead, al-Qaeda's capabilities severely diminished, and the United States scaling back operations in Afghanistan, what will President Barack Obama and his successors do with the U.S. Joint Special Operations Command (JSOC)? A look at what they've already been doing outside of war zones gives us some hints.


In 2005, for example, a 7.6-magnitude earthquake killed 75,000 people in Pakistan-administered Kashmir. After four solid years of war in the region, the United States poured relief services into Pakistan as a show of solidarity with the nominal ally in the war on terror.

The U.S. intelligence community took advantage of the chaos to spread resources of its own into the country. Using valid U.S. passports and posing as construction and aid workers, dozens of Central Intelligence Agency operatives and contractors flooded in without the requisite background checks from the country's Inter-Services Intelligence (ISI) agency. Al-Qaeda had reconstituted itself in the country's tribal areas, largely because of the ISI's benign neglect.

In Afghanistan, the ISI was actively undermining the U.S.-backed government of President Hamid Karzai, training and recruiting for the Taliban, which it viewed as the more reliable partner. The political system was in chaos. The Pakistani army was focused on the threat from India and had redeployed away from the Afghanistan border region, the Durand line, making it porous once again. To some extent, the Bush administration had been focused on Iraq for the previous two years, content with the ISI's cooperation in capturing senior al-Qaeda leaders, while ignoring its support of other groups that would later become recruiting grounds for al-Qaeda.

A JSOC intelligence team slipped in alongside the CIA. The team had several goals. One was prosaic: team members were to develop rings of informants to gather targeting information about al-Qaeda terrorists. Other goals were extremely sensitive: JSOC needed better intelligence about how Pakistan transported its nuclear weapons and wanted to penetrate the ISI. Under a secret program code-named SCREEN HUNTER, JSOC, augmented by the Defense Intelligence Agency and contract personnel, was authorized to shadow and identify members of the ISI suspected of being sympathetic to al-Qaeda. It is not clear whether JSOC units used lethal force against these ISI officers; one official said that the goal of the program was to track terrorists through the ISI by using disinformation and psychological warfare. (The program, by then known under a different name, was curtailed by the Obama administration when Pakistan's anxiety about a covert U.S. presence inside the country was most intense.)

Meanwhile, rotating teams of SEALs from Naval Special Warfare Development Group (DEVGRU) Black squadron, aided by U.S. Army Rangers and other special operations forces, established a parallel terrorist-hunting capability called VIGILANT HARVEST. They operated in the border areas of Pakistan deemed off limits to Americans, and they targeted courier networks, trainers, and facilitators. Legally, these units would operate under the authority of the CIA any time they crossed the border. Some of their missions were coordinated with Pakistan; others were not.

As of 2006, teams of Green Berets were regularly crossing the border. Missions involved as few as three or four operators quietly trekking across the line, their movements monitored by U.S. satellites and drones locked onto the cell phones of these soldiers. (The cell phones were encrypted in such a way that made them undetectable to Pakistani intelligence.) Twice in 2008, Pakistani officials caught wind of these missions, and in one instance, Pakistani soldiers operating in the Federally Administered Tribal Areas fired guns into the air to prevent the approach of drones.

Forward intelligence cells in Pakistan are staffed by JSOC-contracted security personnel from obscure firms with insider names such as Triple Canopy and various offshoots of Blackwater, but it is not clear whether, as Jeremy Scahill of The Nation has argued, the scale of these operations was operationally significant or that the contractors acted as hired guns for the U.S. government. Sources say that only U.S. soldiers performed "kinetic" operations; Scahill's sources suggest otherwise. The security compartments were so small for these operations (one was known as QUIET STORM, a particularly specialized mission targeting the Pakistani Taliban in 2008) that the command will probably be insulated from retrospective oversight about its activities.

A senior Obama administration official said that by the middle of 2011, after tensions between the U.S. and the Pakistani government became particularly and perhaps dangerously high, all JSOC personnel except for its declared military trainers were ferreted out of the country. (They were easy to find using that same secret cell phone pinging technology.) Those who remained were called Omegas, a term denoting their temporary designation as members of the reserve force. They then joined any one of a dozen small contracting companies set up by the CIA, which turned these JSOC soldiers into civilians for the purposes of deniability.

By the end of 2011, SEALs and the CIA Special Activities Division ground branch were crossing the border to target militants whom Pakistan would not. Presently, Task Force Green (also known as TF 3-10) is the active counterterrorist task force in Afghanistan.

Excerpted from The Command: Deep Inside the President's Secret Army, available at Amazon and the iBooks store.
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Presented by

Marc Ambinder & D.B. Grady

Marc Ambinder is a contributing editor for GQ and the co-author, with writer and former U.S. Army paratrooper D.B. Grady, of The Command: Deep Inside the President's Secret Army.

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